DreEX6005388 @ danRer10
Exon Skipping
Gene
ENSDARG00000037362 | scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:ZFIN;Acc:ZDB-GENE-050302-80]
Coordinates
chr7:28325937-28328806:-
Coord C1 exon
chr7:28328717-28328806
Coord A exon
chr7:28328071-28328187
Coord C2 exon
chr7:28325937-28326059
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTCTTTGGTTTGCTCTTAAGAGA
3' ss Score
4.73
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
AAAGGGATGAAATGGCCCCCACCGCCCCAGATCACAATGCCACGTCTTTAGCAGAGGTAGACAAACGAGTCAAGCGGCGACTGCTTATGG
Seq A exon
AGACGTGTGCGGTGAATAATGGAGGCTGTGACAGCACTTGTAAGGACACATCCACTGGTGTTCGCTGCAGCTGCCCGGTGGGATTTACTCTGCAGCCTGATGGCAAATCCTGCAAAG
Seq C2 exon
ACATAGATGAGTGTGAGCTCCACAATGGCGGCTGTGACCACTACTGCAGGAACACCATTGGCAGCTTCGAATGTAGCTGTCGGAAAGGCTTCAAGCTGCTGACGGACGAGCGTTCATGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037362-'7-11,'7-9,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF146701=FXa_inhibition=WD(100=90.0)
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGGATGAAATGGCCCCCA
R:
CTGGCATGAACGCTCGTCC
Band lengths:
212-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]