MmuEX6013064 @ mm10
Exon Skipping
Gene
ENSMUSG00000007279 | Scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
Coordinates
chr7:109836994-109843269:-
Coord C1 exon
chr7:109843180-109843269
Coord A exon
chr7:109838080-109838196
Coord C2 exon
chr7:109836994-109837116
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCCTTCCCACCTCTCGTCAGAAA
3' ss Score
7.03
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
Exon sequences
Seq C1 exon
AGCAAGAGGGCACTGTCTTGGAGGGGACAGAGAGCAATGCCACATCAGTGGCGGATGGAGATAAACGGGTGAAGCGTCGGCTGCTCATGG
Seq A exon
AAACGTGTGCCGTCAACAACGGAGGCTGCGACCGCACCTGTAAGGACACGTCCACAGGCGTCCACTGCAGCTGCCCCACTGGATTCACTCTCCAGGTGGATGGGAAGACATGTAAAG
Seq C2 exon
ATATCGATGAGTGCCAGACCCGGAATGGAGGTTGTAACCATTTCTGCAAAAACACCGTGGGCAGTTTTGACTGCAGTTGCAAAAAAGGATTTAAATTACTAACAGACGAGAAGTCTTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007279-'10-10,'10-8,13-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.419 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF146701=FXa_inhibition=WD(100=90.0)
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAGGGCACTGTCTTGG
R:
CAGTCAAAACTGCCCACGGT
Band lengths:
162-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types