BtaEX6059369 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005356 | ST5
Description
Bos taurus suppression of tumorigenicity 5 (ST5), mRNA. [Source:RefSeq mRNA;Acc:NM_001098093]
Coordinates
chr15:44442942-44446398:+
Coord C1 exon
chr15:44442942-44443051
Coord A exon
chr15:44443244-44443313
Coord C2 exon
chr15:44446321-44446398
Length
70 bp
Sequences
Splice sites
3' ss Seq
CAGACTTCTCCCTGTTCCAGCGA
3' ss Score
7.88
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CTGGACCGACCCACCAAGCAGATGCGGGAGGCAGAGGAGAGGCTCAAGGCCATTCCCCAGTTTTGCTTCCCTGATGCCAAGGACTGGCTCCCTGTGTCAGAGTACAGCAG
Seq A exon
CGAGACGTTCTCCTTCATGTTGACTGGGGAAGATGGCAGCAGACGCTTTGGCTACTGCAGGCGCTTACTG
Seq C2 exon
CCAAGCGGGAAAGGGCCTCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTTGGCTGCTTCGGCCTGTTTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005356-'34-24,'34-23,35-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(51.4=100)
A:
PF0345613=uDENN=FE(32.9=100)
C2:
PF0214116=DENN=PU(10.3=73.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGACCCACCAAGCAGAT
R:
TTGGAAAACAGGCCGAAGCAG
Band lengths:
183-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]