GgaEX0008368 @ galGal4
Exon Skipping
Gene
ENSGALG00000005927 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:HGNC:11350]
Coordinates
chr5:9138918-9148275:+
Coord C1 exon
chr5:9138918-9139027
Coord A exon
chr5:9140515-9140584
Coord C2 exon
chr5:9148198-9148275
Length
70 bp
Sequences
Splice sites
3' ss Seq
GACAATTTTCTTCCTTCTAGTGA
3' ss Score
8.39
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTAGAAAGGCCAACCAAGCAAATGCGTGAAGCAGAGGAGCGTCTCAAGGCCATCCCTCAGTTCTGCTTTCCTGATGCTAAAGACTGGCTCCCTGTCTCTGAATACAACAG
Seq A exon
TGAGACTTTCTCTTTCATGCTGACTGGGGAAGATGGGAGCCGGAGGTTTGGCTATTGCAGGAGGCTGTTG
Seq C2 exon
CCAAGTGGAAAAGGGCCGCGCCTACCTGAAGTCTATTGTGTCATCAGCCGCCTGGGGTGCTTTGACTTATTCTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005927_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(51.4=100)
A:
PF0345613=uDENN=FE(32.9=100)
C2:
PF0214116=DENN=PU(10.3=73.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGCCAACCAAGCAAATGC
R:
ATAAGTCAAAGCACCCCAGGC
Band lengths:
176-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]