RnoEX0086435 @ rn6
Exon Skipping
Gene
ENSRNOG00000013934 | St5
Description
suppression of tumorigenicity 5 [Source:RGD Symbol;Acc:1308995]
Coordinates
chr1:174148661-174152399:-
Coord C1 exon
chr1:174152290-174152399
Coord A exon
chr1:174151627-174151696
Coord C2 exon
chr1:174148661-174148738
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCCTTCCTTTTTCAGTGA
3' ss Score
12.73
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTGGACCGACCCACCAAGCAGATGCGGGAGGCAGAAGAAAGGCTCAAAGCTATCCCCCAGTTTTGCTTTCCAGATGCCAAGGACTGGCTCCCTGTGTCAGAATACAGCAG
Seq A exon
TGAAACCTTTTCTTTCATGCTGACTGGGGAAGACGGTAGCAGACGCTTTGGCTATTGTAGGCGCTTACTG
Seq C2 exon
CCAAATGGGAAAGGGCCTCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTAGGCTGCTTCGGCCTGTTTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013934-'34-30,'34-24,35-30
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(51.4=100)
A:
PF0345613=uDENN=FE(32.9=100)
C2:
PF0214116=DENN=PU(10.3=73.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGACCCACCAAGCAGAT
R:
TTGGAAAACAGGCCGAAGCAG
Band lengths:
183-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]