DreEX0075560 @ danRer10
Exon Skipping
Gene
ENSDARG00000037363 | st5
Description
suppression of tumorigenicity 5 [Source:ZFIN;Acc:ZDB-GENE-030131-2547]
Coordinates
chr7:28217311-28224010:-
Coord C1 exon
chr7:28223901-28224010
Coord A exon
chr7:28222318-28222387
Coord C2 exon
chr7:28217311-28217388
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTTTTATTTGCTTTTACAGTGA
3' ss Score
9.86
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
CTAGAGAGACTCACCAAGCAGATGAGGGAAGCTGAACAGAGACTCAAGGCTATTCCACAGTTCTGCTTCCCAGATGCCAAAGACTGGAGCCCTGTGTCTGAATACAACAG
Seq A exon
TGAGACCTTCTCTTTCATGCTCACTGGAGAAGATGGCAGTAGACGATTTGGATATTGCAGACGGCTTCTG
Seq C2 exon
CCGAGTGGGAAAGGGCCTCGCCTTCCTGAAGTCTATTGTGTCATCAGTCGACTGGGCTGTTTCAACCTGTTTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037363-'14-20,'14-13,15-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(51.4=100)
A:
PF0345613=uDENN=FE(32.9=100)
C2:
PF0214116=DENN=PU(10.3=73.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCAGATGAGGGAAGCTG
R:
ACAGGTTGAAACAGCCCAGTC
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]