MmuEX6013040 @ mm9
Exon Skipping
Gene
ENSMUSG00000031024 | St5
Description
suppression of tumorigenicity 5 [Source:MGI Symbol;Acc:MGI:108517]
Coordinates
chr7:116678808-116682557:-
Coord C1 exon
chr7:116682448-116682557
Coord A exon
chr7:116681790-116681859
Coord C2 exon
chr7:116678808-116678885
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCTTTCCTGTTTCAGTGA
3' ss Score
11.72
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTGGACCGTCCCACCAAACAGATGCGGGAGGCAGAAGAAAGGCTCAAAGCTATCCCCCAGTTTTGCTTTCCGGATGCCAAGGACTGGCTCCCTGTGTCAGAATACAGCAG
Seq A exon
TGAAACCTTTTCTTTCATGCTGACTGGGGAAGATGGCAGCAGGCGCTTTGGCTATTGTAGGCGCTTACTG
Seq C2 exon
CCAAGTGGGAAAGGGCCTCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTAGGCTGCTTCGGTTTGTTTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031024-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(51.4=100)
A:
PF0345613=uDENN=FE(32.9=100)
C2:
PF0214116=DENN=PU(10.3=73.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGTCCCACCAAACAGATG
R:
AACAAACCGAAGCAGCCTAGG
Band lengths:
178-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: