BtaEX6059374 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005356 | ST5
Description
Bos taurus suppression of tumorigenicity 5 (ST5), mRNA. [Source:RefSeq mRNA;Acc:NM_001098093]
Coordinates
chr15:44437307-44440021:+
Coord C1 exon
chr15:44437307-44437458
Coord A exon
chr15:44438773-44438988
Coord C2 exon
chr15:44439925-44440021
Length
216 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCCGCCCCACGCCAGCTC
3' ss Score
5.43
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
Exon sequences
Seq C1 exon
GAGATCTGCCCAAGGAGAATCCGTATGAGGATGTGGACTTAAAGAGCCGAAGAGCAGGACGAAAACCCCAGCAGCTGTCTGAGAACTCCTTGGACTCTTTGCACAGGATGTGGAGTCCTCAGGACAGGAAGTACAACAACCCACCCACTCAG
Seq A exon
CTCTCCCTGAAACCCGGAAGCCAGTCCCTGCGCAGCGGGAACTGGTCGGAAAGGAAGAGCCACCGGCTGCCACGGTTACCCAAGAGGCACAGCCATGACGACATGCTACTGCTGGCTCAGCTGAGCCTGCCGTCTTCGCCCTCCAGCCTTAATGAGGACAGCCTCAGCACCACCAGTGAGCTGCTGTCCAGCCGCCGGGCCCGTCGCATCCCCAAG
Seq C2 exon
CTTGTCCAAAGAATTAACTCCATCTACAATGCCAAGAGGGGAAAGAAGAGGTTAAAAAAGCTGTCTATGTCCAGCATTGAGACATCATCACTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005356-'26-17,'26-16,28-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.833 C2=0.455
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGCCCAAGGAGAATCCG
R:
TCAGTGATGATGTCTCAATGCTGG
Band lengths:
244-460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]