RnoEX0086443 @ rn6
Exon Skipping
Gene
ENSRNOG00000013934 | St5
Description
suppression of tumorigenicity 5 [Source:RGD Symbol;Acc:1308995]
Coordinates
chr1:174154577-174158422:-
Coord C1 exon
chr1:174158236-174158422
Coord A exon
chr1:174155610-174155825
Coord C2 exon
chr1:174154577-174154673
Length
216 bp
Sequences
Splice sites
3' ss Seq
TATCCTGTCCCCCATGCCAGCTG
3' ss Score
8.26
5' ss Seq
AAGGTATCC
5' ss Score
8.33
Exon sequences
Seq C1 exon
TTTCCTTCTCTTCTCCAACGTTGCCTCCTCTGCAGGAGGGCTTCCCAAGGAGAATCCCTATGAGGATGTGGACTTAAAGAACCGAAGAGCTGGACGAAAATCCCAGCAACTGTCTGAGAACTCCCTGGACTCTTTGCACAGGATGTGGAGTCCTCAAGACAGGAAGTACAACAACCCACCCATGCAG
Seq A exon
CTGTCCCTGAAACCCAGCAGCCAGTCCCTGCGCAGTGGGAACTGGTCAGAAAGGAAGAGCCATCGTTTGCCACGATTACCCAAGAGGCATAGCCATGATGACATGATGCTGCTGGCTCAGCTGAGCCTGCCATCTTCACCCTCCAGCCTCAATGAGGACAGCCTCAGCACCACAAGTGAGCTGCTGTCCAGCCGCAGGGCCCGTCGCATTCCCAAG
Seq C2 exon
CTTGTCCAAAGAATTAACTCTATCTATAATGCCAAGAGAGGAAAGAAGAGGTTGAAAAAGCTGTCTCTGTCCAGCCTTGAGACAGCCTCATTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013934_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.861 C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCTTCTCTTCTCCAACGTTGC
R:
GAGGCTGTCTCAAGGCTGGA
Band lengths:
276-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]