MmuEX0045127 @ mm10
Exon Skipping
Gene
ENSMUSG00000031024 | St5
Description
suppression of tumorigenicity 5 [Source:MGI Symbol;Acc:MGI:108517]
Coordinates
chr7:109541336-109545228:-
Coord C1 exon
chr7:109545077-109545228
Coord A exon
chr7:109542320-109542535
Coord C2 exon
chr7:109541336-109541432
Length
216 bp
Sequences
Splice sites
3' ss Seq
TATCCTGTCCCCCATGCCAGCTG
3' ss Score
8.26
5' ss Seq
AAGGTATCC
5' ss Score
8.33
Exon sequences
Seq C1 exon
GAGGGCTTCCCAAGGAGAATCCCTACGAGGATGTGGACTTAAAGAACCGGAGAGCTGGACGAAAATCCCAGCAACTGTCTGAGAACTCCTTGGACTCTTTGCACAGGATGTGGAGTCCCCAAGACAGGAAGTACAACCACCCACCCATGCAG
Seq A exon
CTGTCCCTGAAGTCCAACAGCCAGTCCCTGCGCAGTGGGAACTGGTCAGAAAGGAAGAGCCATCGTTTGCCACGATTACCCAAGAGGCATAGCCATGATGACATGATGCTGTTGGCTCAGCTGAGCCTGCCATCTTCACCCTCCAGCCTCAATGAGGACAGCCTCAGCACCACAAGTGAGCTGCTGTCCAGCCGCAGGTCCCGCCGCATTCCCAAG
Seq C2 exon
CTTGTCCAAAGAATTAACTCTATCTATAATGCCAAGAGAGGAAAGAAGAGGTTGAAAAAGCTGTCTATGTCCAGCCTTGAGACAGCATCATTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031024_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.889 C2=0.455
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCCCAAGGAGAATCCCT
R:
CTCAATGATGCTGTCTCAAGGCT
Band lengths:
244-460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types