GgaEX0008374 @ galGal3
Exon Skipping
Gene
ENSGALG00000005927 | ST5
Description
NA
Coordinates
chr5:10655410-10661247:+
Coord C1 exon
chr5:10655410-10655558
Coord A exon
chr5:10658405-10658620
Coord C2 exon
chr5:10661151-10661247
Length
216 bp
Sequences
Splice sites
3' ss Seq
AGCTGTCCTTGTTCCCACAGCTA
3' ss Score
9.82
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAGAGTCATCCAAGGAAAACCCGTATGAGGATGTGGAGCTGAAGGGCCGTCACGCGGGCCGAAAATCCCATCAGCTCTCCGAGAACTCCCTAGATTCTTTGCACAGGATGTGGACTCCGCAGGACAGGAAATACACATCACCTCCCCAG
Seq A exon
CTACCTTCAAAGCCCAGCAGCCAGTCTCTGCGCGTTGGGAACTGGTCAGAAAGGAAGACCCACCGCTTACCACGGCTACCCAAGCGGCACAGCCATGATGATATGCTGCTGCTGGCTCAGCTTGGCATTCCCTCCTCCCCCTCCAGCCTTAATGAGGACAGTCTGAGTACTGCAAGTGAGCTGCTGTCTACACGCCGGGCCAGGAGGATCCCAAAG
Seq C2 exon
CTTGTCCAGAGAATCAATTCCATCTACAGTGCAAAAAGAGGGAAAAAACGATTGAAGAAACTTTCTATGTCCAACATTGAGACTGCATCCCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005927-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.806 C2=0.424
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCATCCAAGGAAAACCCGT
R:
CTCTCAGGGATGCAGTCTCAA
Band lengths:
244-460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]