DreEX6005379 @ danRer10
Exon Skipping
Gene
ENSDARG00000037363 | st5
Description
suppression of tumorigenicity 5 [Source:ZFIN;Acc:ZDB-GENE-030131-2547]
Coordinates
chr7:28228842-28233738:-
Coord C1 exon
chr7:28233599-28233738
Coord A exon
chr7:28231759-28231974
Coord C2 exon
chr7:28228842-28228938
Length
216 bp
Sequences
Splice sites
3' ss Seq
ATCATCCTCCGTTTCACCAGCTG
3' ss Score
7.05
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
AGAAAGAGAATCCATATGAGGATGTAGATCCAGTGAGGAGATGTCTGGCCAGAAATTCCCGCCTGTTACCCGAGAGGTCCCGGGATTCACTCAACAGGATGTGGACCTCCCAAGAAAGGAAGTCCATAACACCTCCCCAG
Seq A exon
CTGCCCTCTAAACCGAGCAGTCAGTCTCTGCGGCTGCCAGGTCCTGCTGACAGGAAGAGCCAGCGCCCGTCCCGTCTGTCTAAGAGGCACAGTCATGATGACATGCTGCTGCTCCCCCAGCTGGGCATGCCTTCCTCCCCCTGTGGCCTATTAGATGACAGCCTGAACCCTTCCACCGATACCTTGGCCTCCCACAGGCAGAAACGAGTCCCCAAG
Seq C2 exon
GTGGTGTTGAGAATAAACTCTATCTACTGTACCAAAAGAGGCAAGAAGAGGCTAAAGAAGCTTTCACTTTCAAACATAGAAACTGCATCTTTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037363-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.931 C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGAGATGTCTGGCCAGA
R:
CTCGTAAAGATGCAGTTTCTATGT
Band lengths:
205-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]