BtaEX6060052 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005034 | CAPN5
Description
calpain 5 [Source:HGNC Symbol;Acc:HGNC:1482]
Coordinates
chr15:57280960-57302706:+
Coord C1 exon
chr15:57280960-57281091
Coord A exon
chr15:57299199-57299407
Coord C2 exon
chr15:57302514-57302706
Length
209 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCTCTCCCGATCCAGGTC
3' ss Score
11.59
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GACATCTGCGAGGACCCCCGCCTCTTTGTGGACGGCATCAGCTCCCACGACCTGCACCAGGGCCAGGTGGGCAACTGCTGGTTTGTGGCGGCCTGCTCATCCCTCGCTTCCCGCGAGTCACTGTGGCAAAAG
Seq A exon
GTCATCCCAGACTGGAAGGAGCAGGAGTGGGACCCCGAGAAGCCCAATGCCTACGCAGGCATCTTCCACTTCCACTTCTGGCGCTTCGGGGAGTGGGTGGATGTGGTCATCGATGACCGGCTGCCCACGGTCAACAACCAGCTCATCTACTGCCACTCTAGCTCCCGCAATGAGTTCTGGTGTGCCCTGGTGGAGAAGGCCTACGCCAA
Seq C2 exon
GCTGGCGGGCTGTTACCAGGCCCTGGATGGAGGCAACACGGCGGATGCGTTGGTGGACTTCACAGGTGGGGTTTCTGAGCCCATCGACTTGACCGAGGGTGACTTTGCCAACGACGAGGCCAAGAGGAACCAGCTCTTTGAGCGTGTGCTGAAAGTGCACAGCCGGGGAGGCCTCATCAGTGCCTCCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005034-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.5=100)
A:
PF0064816=Peptidase_C2=FE(21.7=100)
C2:
PF0064816=Peptidase_C2=FE(20.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTTTGTGGACGGCATCAG
R:
TGATGGAGGCACTGATGAGGC
Band lengths:
303-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]