MmuEX6012422 @ mm9
Exon Skipping
Gene
ENSMUSG00000035547 | Capn5
Description
calpain 5 [Source:MGI Symbol;Acc:MGI:1100859]
Coordinates
chr7:105281343-105300453:-
Coord C1 exon
chr7:105300322-105300453
Coord A exon
chr7:105284270-105284478
Coord C2 exon
chr7:105281343-105281535
Length
209 bp
Sequences
Splice sites
3' ss Seq
CCTCCATTCTCCCCACCCAGGTC
3' ss Score
9.94
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GATATCTGCGACGATCCCCGGCTCTTCGTAGATGGCATCAGCTCCCATGACCTGCACCAGGGCCAGGTGGGCAACTGCTGGTTTGTGGCTGCCTGCTCATCACTGGCCTCCCGAGAGTCACTCTGGCAGAAG
Seq A exon
GTCATCCCAGACTGGAAGGAGCAGGAATGGAACCCCGAGAAGCCTGACAGCTATGCTGGCATCTTCCACTTCAACTTCTGGCGCTTTGGGGAGTGGGTGGACGTAATCGTCGATGACCGGCTGCCCACAGTCAACAACCAGCTCATTTACTGCCATTCCAACTCCAAAAATGAGTTCTGGTGTGCCCTGGTGGAGAAGGCCTATGCCAA
Seq C2 exon
GCTGGCCGGCTGTTACCAGGCCCTGGACGGAGGCAACACGGCCGATGCATTGGTGGATTTCACAGGTGGTGTTTCTGAACCCATTGACCTGACCGAGGGGGACTTGGCCACTGACGAGGCTAAGAGGAATCAGCTCTTTGAGCGAGTGCTGAAGGTGCACAGCAGAGGCGGGCTCATCAGTGCCTCCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035547-'7-11,'7-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.5=100)
A:
PF0064816=Peptidase_C2=FE(21.7=100)
C2:
PF0064816=Peptidase_C2=FE(20.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTCTTCGTAGATGGCATC
R:
TTGATGGAGGCACTGATGAGC
Band lengths:
306-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: