GgaEX0000719 @ galGal4
Exon Skipping
Gene
ENSGALG00000000750 | CAPN5
Description
calpain 5 [Source:HGNC Symbol;Acc:HGNC:1482]
Coordinates
chr1:192466609-192477411:-
Coord C1 exon
chr1:192477280-192477411
Coord A exon
chr1:192467541-192467749
Coord C2 exon
chr1:192466609-192466801
Length
209 bp
Sequences
Splice sites
3' ss Seq
CCTCCTTGTGTTGAACTCAGGTC
3' ss Score
8.18
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GAAATCTGCTCCGATCCCCATCTCTTTGTGGACGGGATCAGCTCCCATGATTTACACCAGGGCCAAGTTGGGAACTGCTGGTTTGTGGCTGCCTGCTCCTCCCTGGCATCACGCGAGGCCCTGTGGCAGAAG
Seq A exon
GTCATCCCAGACTGGAAGGAGCAGGAGTGGAATGCCGAGAAGCCTGAGAGCTATGCAGGGATCTTCCACTTCCAATTCTGGCGTTTCGGTCAGTGGCTGGATGTGGTAATAGATGACCGCCTGCCCACGCTCCACAACCAGCTCATCTACTGCCACTCCAACTCCAAGAATGAGTTCTGGTGTGCCTTGGTGGAGAAGGCTTATGCCAA
Seq C2 exon
GTTGTCAGGATGTTACGAGGCCCTGGATGGAGGCAACACAGCTGATGCTCTGGTAGACTTTACTGGTGGGGTCTCTGAACCTATCGACCTGACTGAAGGGGACTACACCACTGATGAAGCCAAACGAAACCTCCTCTTTGAGCGTGTGTTGAAAGTGCACAACCGTGGAGGCCTCATCAGCTGCTCCATCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000750_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.6=100)
A:
PF0064816=Peptidase_C2=FE(21.8=100)
C2:
PF0064816=Peptidase_C2=FE(20.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCGATCCCCATCTCTTT
R:
TCCACGGTTGTGCACTTTCAA
Band lengths:
295-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]