DreEX6084367 @ danRer10
Exon Skipping
Gene
ENSDARG00000069748 | capn5b
Description
calpain 5b [Source:ZFIN;Acc:ZDB-GENE-091116-29]
Coordinates
chr21:22147159-22157834:+
Coord C1 exon
chr21:22147159-22147290
Coord A exon
chr21:22157344-22157552
Coord C2 exon
chr21:22157642-22157834
Length
209 bp
Sequences
Splice sites
3' ss Seq
AACTGTGTGTGGTTTTCTAGGTT
3' ss Score
9.88
5' ss Seq
CAAGTAAAC
5' ss Score
1.87
Exon sequences
Seq C1 exon
GAGCTGTGTGACGATCCTCATTTGTTTGTGGACGGGATCAGTGCCCATGACTTGCACCAAGGGCAGCTGGGAAACTGTTGGTTTGTGGCGGCCTGCTCCAGTCTGGCCTCCCGAGAGTCACTCTGGCAGAAA
Seq A exon
GTTATCCCAGACTGGAAGGAGCAGGAATGGGACCCGGAGAAGGCTGATTCTTATGCAGGAATCTTTCACTTCCGCTTCTGGCGGTTTGGCGAATGGGTAGACGTAGTGATCGATGACCGTCTGCCCACGGTGGACAACCAGCTGGTTTACTGCCATTCCAATGACAGCAATGAGTTCTGGAGCGCCCTTGTGGAAAAAGCCTATGCCAA
Seq C2 exon
AGTCTATGGCTGTTATGAAGCACTGGATGGTGGGAACACGGCTGATGCTCTGGTGGATTTCACTGGTGGTGTGTCTGAACCGATGGACCTGCTGGAGGGTCAGTTCGCTCAGGATGAAACTGCCAGAAACCAGCTCTTCGAGAGGGTGCTTAAGGTTCATAATCGAGATGGCCTCATCAGCTGCTCCATCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069748-'1-4,'1-3,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.5=100)
A:
PF0064816=Peptidase_C2=FE(21.7=100)
C2:
PF0064816=Peptidase_C2=FE(20.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATCAGTGCCCATGACTTG
R:
CCTGATGGAGCAGCTGATGAG
Band lengths:
292-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]