RnoEX0016725 @ rn6
Exon Skipping
Gene
ENSRNOG00000014251 | Capn5
Description
calpain 5 [Source:RGD Symbol;Acc:620084]
Coordinates
chr1:163084515-163103742:-
Coord C1 exon
chr1:163103611-163103742
Coord A exon
chr1:163087975-163088183
Coord C2 exon
chr1:163084515-163084707
Length
209 bp
Sequences
Splice sites
3' ss Seq
CCTCCATTCTCCCCACCTAGGTC
3' ss Score
10.5
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GATATCTGCGATGATCCCCGGCTCTTCGTCGATGGCATCAGCTCGCATGACCTGCACCAGGGCCAGGTGGGCAACTGCTGGTTTGTGGCCGCCTGCTCATCACTCGCCTCCCGGGAGTCACTCTGGCAAAAG
Seq A exon
GTCATCCCAGACTGGAAGGAGCAGGAATGGAACCCCGAGAAGCCCGACAGCTATGCTGGCATCTTCCATTTCAACTTCTGGCGCTTTGGGGAGTGGGTGGACGTGGTCGTCGATGACCGGCTGCCCACAGTCAACAACCAACTCATTTACTGCCACTCCAACTCGAAAAATGAGTTCTGGTGTGCCCTGGTGGAGAAGGCCTATGCCAA
Seq C2 exon
GCTGGCAGGCTGTTACCAGGCCCTGGACGGAGGCAACACAGCCGATGCACTGGTGGATTTCACAGGCGGTGTTTCGGAACCCATCGACCTGACCGAGGGGGACTTGGCCACAGATGAGGCTAAGAGAAGCCAGCTCTTTGAACGTGTGTTGAAGGTGCACAGCAGAGGTGGGCTCATCAGTGCCTCCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014251_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(53.1=100),PF065547=Olfactory_mark=PU(11.1=29.5)
A:
PF0064816=Peptidase_C2=FE(21.7=100)
C2:
PF0064816=Peptidase_C2=FE(20.1=100)
Main Skipping Isoform:
ENSRNOT00000019370fB2337
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATATCTGCGATGATCCCCGG
R:
CTCTGCTGTGCACCTTCAACA
Band lengths:
299-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]