BtaEX6060055 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57410415-57412196:+
Coord C1 exon
chr15:57410415-57410600
Coord A exon
chr15:57410960-57411076
Coord C2 exon
chr15:57412113-57412196
Length
117 bp
Sequences
Splice sites
3' ss Seq
GACCCACCCTCCCTCTGCAGTCC
3' ss Score
9.71
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GAGTTGCCCAAGTACCTCCGAGGCTACCACAAGTGCACGCGGGAAGAGGTGCTGCAGCTGGGGGCGCTCATCTATAGGGTCAAGTTCGAGGAGGATAAGTCCTACTTCCCCAGTATCCCCAAGCTGCTCCGGGAGCTGGTGCCCCAGGACCTCATCCGGCAGGTCTCGCCTGACGACTGGAAGAGG
Seq A exon
TCCATCGTCGCCTATTTCAACAAGCACGCGGGGAAGTCCAAGGAGGAGGCCAAGCTGGCTTTCCTGAAGCTCATCTTCAAGTGGCCCACCTTCGGCTCAGCCTTCTTTGAGGTGAAG
Seq C2 exon
CAAACTACAGAGCCAAACTTTCCTGAGATCCTCTTAATTGCCATCAACAAGTATGGGGTCAGCCTCATTGATCCGAGAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-'49-54,'49-53,50-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(55.0=100)
A:
PF0037313=FERM_M=PD(31.5=89.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTACCTCCGAGGCTACCAC
R:
TGAGGCTGACCCCATACTTGT
Band lengths:
244-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]