GgaEX1038173 @ galGal3
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198106550-198108485:-
Coord C1 exon
chr1:198108300-198108485
Coord A exon
chr1:198107480-198107596
Coord C2 exon
chr1:198106550-198106633
Length
117 bp
Sequences
Splice sites
3' ss Seq
TACTGTCTTCTCTGTTGCAGTCC
3' ss Score
9.7
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GAGTTACCAAAGTATCTACGTGGTTACCACAAGTGTACACGGGAAGAGGTCCTGCAGCTGGCAGCTCTCATCTATCGAGTGAAATTTGAGGATGACAAGTCCTATTTCCCCAGCATCCCTAAGCTCCTGAAGGAGCTGGTGCCTCAGGACCTGGTCCGGCAGCTCTCTCCAGATGACTGGAAACGG
Seq A exon
TCCATTGTGGCATACTACAATAAGCATGCAGGCAAAACAAGAGAAGAAGCCAAGCTTGCCTTCCTAAAGATTATCTTCAAGTGGCCTACATTTGGATCAGCATTCTTTGAAGTGAAG
Seq C2 exon
CAAACTACAGAGCCAAATTATCCAGAAATCCTCCTAATTGCCATCAATAAACATGGAGTCAGCCTCATCGATCCTAAAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'44-45,'44-44,45-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(54.0=100)
A:
PF0037313=FERM_M=PD(31.0=89.7),PF0064018=PID=PU(4.5=7.7)
C2:
PF0064018=PID=FE(40.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTACCACAAGTGTACACGG
R:
TAGGATCGATGAGGCTGACTCC
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]