RnoEX6003854 @ rn6
Exon Skipping
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163003367-163004911:-
Coord C1 exon
chr1:163004726-163004911
Coord A exon
chr1:163004208-163004324
Coord C2 exon
chr1:163003367-163003450
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGATTCCCCTCCCCCACAGTCT
3' ss Score
9.57
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAACTGCCCAAGTATCTCCGAGGCTACCACAAGTGCACCCGGGAGGAGGTGCTACAGCTGGGCGCGCTCATCTACAGGGTCAAGTTTGAGGAGGACAAATCCTACTTCCCTAGCATCCCCAAGTTGCTGAGGGAGCTGGTGCCCCAGGACCTAATCCGGCAGGTCTCACCTGATGACTGGAAACGG
Seq A exon
TCTATTGTCGCCTACTTCAACAAGCATGCAGGGAAGTCCAAGGAGGAGGCCAAGCTGGCCTTCCTCAAGCTCATCTTCAAGTGGCCCACCTTTGGATCAGCCTTCTTTGAGGTGAAG
Seq C2 exon
CAAACGACAGAACCAAACTTCCCAGAGATTCTCTTAATTGCCATCAACAAGTATGGGATCAGCCTCATCGATCCCAGAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641-'55-55,'55-54,56-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(55.0=100)
A:
PF0037313=FERM_M=PD(31.5=89.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAAGTATCTCCGAGGCTA
R:
GGATCGATGAGGCTGATCCCA
Band lengths:
255-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]