MmuEX6012417 @ mm9
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:105201667-105203038:-
Coord C1 exon
chr7:105202853-105203038
Coord A exon
chr7:105202316-105202432
Coord C2 exon
chr7:105201667-105201750
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGATTCCCTTCCCCCACAGTCT
3' ss Score
10.17
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAACTGCCCAAATATCTCCGAGGCTACCACAAGTGCACCCGGGAGGAGGTGCTGCAGCTGGGCGCACTCATCTACAGGGTCAAGTTTGAGGAGGACAAATCCTACTTCCCTAGCATCCCCAAGTTGCTGAGGGAGCTGGTACCCCAGGACCTAATCCGGCAGGTCTCACCTGATGACTGGAAACGG
Seq A exon
TCTATTGTCGCCTACTTCAACAAACATGCGGGGAAGTCCAAGGAGGAAGCCAAGCTGGCCTTCCTCAAACTCATCTTCAAGTGGCCCACCTTTGGCTCAGCCTTCTTTGAGGTGAAG
Seq C2 exon
CAAACTACAGAACCAAACTTCCCAGAGATTCTCTTAATTGCCATCAACAAGTACGGGGTCAGCCTCATCGATCCCAGAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-'57-59,'57-58,58-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(55.0=100)
A:
PF0037313=FERM_M=PD(31.5=89.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCAAATATCTCCGAGGC
R:
GACCCCGTACTTGTTGATGGC
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: