DreEX6084370 @ danRer10
Exon Skipping
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22269777-22270378:+
Coord C1 exon
chr21:22269777-22269962
Coord A exon
chr21:22270047-22270163
Coord C2 exon
chr21:22270295-22270378
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTCTCTCTTCTGCAGTCT
3' ss Score
10.73
5' ss Seq
AAGGCGAGT
5' ss Score
2.72
Exon sequences
Seq C1 exon
GAGCTTCCAAAGTATTTGCGGGGCTATCACAAGTGCTCTGTTGAGGAGGCCTTTCAGCTTGCTGCGCTCATATACAGAGTCCGGTTCGAGGAGGACAAATCCCACTTCGTGCACTTCAGCAAGATGCAGAAAGAGCTGCTTCCTCAAGACCTCATTCATCAACTCTCACCCGACGACTGGAAACGG
Seq A exon
TCTGTCGTCACACACTTTAACAAGCATGCTGGGAAATCTCGAGAGGAAGCAAAACTCATGTTTCTGGAAATCATTTACAAGTGGCCTACTTTTGGATCTGCCTTTTTTGAAGTCAAG
Seq C2 exon
CAATCGTCAGATCCACATTTCCCAGAAGTCCTCTTGATTGCGATCAACAAGCTTGGTGTTACTCTTATTGACCCGAAAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632-'50-48,'50-47,51-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(55.5=100)
A:
PF0037313=FERM_M=PD(31.8=89.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAAAGTATTTGCGGGGC
R:
ACACCAAGCTTGTTGATCGCA
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]