DreEX6063697 @ danRer10
Exon Skipping
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3178323-3181099:+
Coord C1 exon
chr18:3178323-3178508
Coord A exon
chr18:3180811-3180927
Coord C2 exon
chr18:3181016-3181099
Length
117 bp
Sequences
Splice sites
3' ss Seq
GCCGTTTTGTTTCTTGGCAGTCG
3' ss Score
8.54
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GAGCTTCCTAAATATCTGCGAGGATATCACAAGTGTTCCAGGGAGGAGGTTTTCCAGCTCGGCGCTCTGATCTATCGAGTTAAATTTGAGGACGACAAATCCCACTTTCCCAGCATTCCCAAAATGCTGAAGGAGATGATTCCTCAAGACCTGATTCGCCAGCTCTCACCCGACGACTGGAAAAGG
Seq A exon
TCGATTGTGGCGTACTTCAACAGGCATGCTGGGAAATCAAGAGAGGAAGCCAAGCTGATGTTTCTGAAGATCATTTTCAAATGGCCCACGTTTGGTTCAGCCTTTTTTGAAGTTAAA
Seq C2 exon
CAAACCACTGAGCCGCACTTCCCTGAGATCCTGCTGATCGCCATCAACAAATATGGAGTCAGTCTGATCGACCCCAAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871-'50-48,'50-47,51-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(55.0=100)
A:
PF0037313=FERM_M=PD(31.5=89.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACAAGTGTTCCAGGGAGG
R:
CTTGTTTTTGGGGTCGATCAGA
Band lengths:
245-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]