BtaEX6060069 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57379136-57383519:+
Coord C1 exon
chr15:57379136-57379263
Coord A exon
chr15:57382077-57382203
Coord C2 exon
chr15:57383400-57383519
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTGTACCCCATTCTGCTTAGGGA
3' ss Score
6.44
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTGACCAAGAGGCTGCATGATGGGGAGTCCACGGTGCAGGGCAACAGCATGCTGGAGGACCGGCCCACCTCCAACCTGGAGAAGCTGCACTTCATCATTGGCAACGGCATCCTGCGGCCAGCACTCCG
Seq A exon
GGATGAGATCTACTGCCAGATCAGCAAGCAGCTCACTCACAACCCCTCCAAGAGCAGCTATGCCCGGGGCTGGATCCTCGTGTCTCTCTGCGTGGGCTGCTTTGCCCCCTCTGAGAAGTTTGTTAAG
Seq C2 exon
TACCTGCGGAACTTCATCCATGGGGGACCCCCTGGCTACGCCCCGTACTGTGAGGAGCGACTCAGGAGGACCTTTGTCAATGGGACACGGACACAGCCGCCCAGCTGGCTGGAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-'28-28,'28-27,29-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.465 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(18.9=46.5)
A:
PF0078412=MyTH4=FE(39.6=100)
C2:
PF0078412=MyTH4=FE(36.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCAAGAGGCTGCATGAT
R:
GGCTGTGTCCGTGTCCCATT
Band lengths:
226-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]