RnoEX6003839 @ rn6
Exon Skipping
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163021788-163024504:-
Coord C1 exon
chr1:163024377-163024504
Coord A exon
chr1:163022459-163022585
Coord C2 exon
chr1:163021788-163021907
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAGGTATTGTCTCCACTTAGGGA
3' ss Score
6.62
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTGACCAAGAGGCTGCATGATGGGGAGTCCATGGTACAGGGCAACAGCATGCTGGAGGACCGGCCCACCTCAAATCTAGAGAAGCTGCACTTCATCATTGGCAACGGTATCCTGCGACCTGCACTGCG
Seq A exon
GGATGAGATTTACTGCCAGATCAGCAAGCAACTCACACACAACCCATCCAAGAGCAGCTATGCCAGGGGCTGGATCCTTGTGTCTCTGTGTGTGGGATGCTTCGCCCCTTCTGAGAAGTTTGTTAAG
Seq C2 exon
TACCTACGGAACTTCATCCATGGAGGCCCACCCGGCTATGCCCCCTACTGTGAGGAGCGCCTGAGAAGGACCTTTGTCAATGGAACTCGGACACAGCCACCCAGTTGGCTGGAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641-'33-33,'33-32,34-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(18.9=46.5)
A:
PF0078412=MyTH4=FE(39.6=100)
C2:
PF0078412=MyTH4=FE(36.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCAAGAGGCTGCATGAT
R:
CTGCAGTTCCAGCCAACT
Band lengths:
248-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]