GgaEX6006878 @ galGal4
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192371071-192375951:-
Coord C1 exon
chr1:192375824-192375951
Coord A exon
chr1:192374487-192374613
Coord C2 exon
chr1:192371071-192371190
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCACTTCTATTGCAGGGA
3' ss Score
9.79
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTAACAAAGAGACTTCATGACGGGGAGTCAACACTCCAAGGTAATAGCATGCTTGAAGACCGGCCCACCTCCAACCTGGAGAAGCTCCATTTCATTATTGGTAATGGCATCCTCAGGCCAGCATTAAG
Seq A exon
GGATGAAATCTATTGTCAAATCTGTAAGCAGCTGACTCAGAACCCATCCAAAAGCAGTCACGCCAGGGGCTGGATCCTGATGTCCCTCTGCGTGGGGTGTTTTGCTCCTTCTGAGAAGTTTGTAAAG
Seq C2 exon
TACTTAAGGAACTTTATCAATGGAGGCCCTCCTGGTTATGCTCCGTATTGTGAAGAGAGGCTGCGGAGGACGTTTGCCAATGGGACAAGGACACAGCCACCCAGCTGGCTGGAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'39-39,'39-38,40-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.465 A=0.000 C2=0.100
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(18.9=46.5)
A:
PF0078412=MyTH4=FE(39.6=100)
C2:
PF0078412=MyTH4=FE(36.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGACTTCATGACGGGGAGT
R:
CTGCAGTTCCAGCCAGCTG
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]