MmuEX0030569 @ mm9
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:105220882-105223644:-
Coord C1 exon
chr7:105223517-105223644
Coord A exon
chr7:105221630-105221756
Coord C2 exon
chr7:105220882-105221001
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAGGTATTGTCCCCACTTAGGGA
3' ss Score
5.61
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTGACCAAGAGGCTGAACGATGGGGAATCCACGGTACAGGGCAACAGCATGCTGGAGGATCGGCCCACCTCAAATCTAGAGAAGCTGCACTTCATCATCGGCAACGGCATCCTGCGGCCTGCGCTGCG
Seq A exon
GGACGAGATTTACTGCCAGATCAGTAAGCAGCTCACACACAACCCATCCAAGAGCAGCTATGCCAGGGGCTGGATCCTCGTGTCGCTCTGTGTGGGCTGCTTCGCCCCCTCTGAGAAGTTCGTTAAG
Seq C2 exon
TACCTGCGGAACTTCATCCACGGAGGCCCACCTGGCTATGCTCCTTACTGTGAGGAGCGCCTGAGGAGGACCTTTGTCAACGGAACTCGGACACAGCCACCCAGCTGGCTGGAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-'38-36,'38-35,39-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.465 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(18.9=46.5)
A:
PF0078412=MyTH4=FE(39.6=100)
C2:
PF0078412=MyTH4=FE(36.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCAAGAGGCTGAACGAT
R:
AGCTGGGTGGCTGTGTCC
Band lengths:
234-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: