DreEX6084387 @ danRer10
Exon Skipping
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22252754-22253333:+
Coord C1 exon
chr21:22252754-22252881
Coord A exon
chr21:22252971-22253097
Coord C2 exon
chr21:22253214-22253333
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGGCTTGTTTCCTTCCTCAGAGA
3' ss Score
8.26
5' ss Seq
AAAGTAAAA
5' ss Score
1.18
Exon sequences
Seq C1 exon
GTGACTAGAAGGCTGACGGACAGCGATTACAGTCTACAGGGAAATAGCATGCTGGAAGATCGACCCACCTCAAATTTAGAAAAGCTACACTTCATCATTGGCAATGGCATTTTACGTCCAGCTCTCAG
Seq A exon
AGATGAAATCTACTGTCAGATCTGTAAACAACTGAGCCAGAATGCATCTAAAAGCAGTCATGCCCGTGGCTGGATCTTGCTCTCCCTCTGTGTGGGCTGCTTTGCTCCTTCGGAAAAGTTTGTAAAA
Seq C2 exon
TATCTGCGGACGTTCATTAACAGCGGGCCTCCTGGTTATGCGCCGTATTGTGAAGAGAGACTAAGAAGAACTTTTGCAAATAAAACGAGAACTCAGCCTCCTTCTTGGCTTGAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632-'30-28,'30-27,31-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(18.9=46.5)
A:
PF0078412=MyTH4=FE(39.6=100)
C2:
PF0078412=MyTH4=FE(36.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTAGAAGGCTGACGGACA
R:
CAGCTCAAGCCAAGAAGGAGG
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]