HsaEX6003900 @ hg38
Exon Skipping
Gene
ENSG00000137474 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr11:77184588-77190139:+
Coord C1 exon
chr11:77184588-77184715
Coord A exon
chr11:77189344-77189470
Coord C2 exon
chr11:77190020-77190139
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTGCCCTGCTGCCTGCCCAGGGA
3' ss Score
6.88
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTGACCAAGAGGCTGCATGACGGGGAGTCCACAGTGCAGGGCAACAGCATGCTGGAGGACCGGCCCACCTCCAACCTGGAGAAGCTGCACTTCATCATCGGCAATGGCATCCTGCGGCCAGCACTCCG
Seq A exon
GGACGAGATCTACTGCCAGATCAGCAAGCAGCTGACCCACAACCCCTCCAAGAGCAGCTATGCCCGGGGCTGGATTCTCGTGTCTCTCTGCGTGGGCTGTTTCGCCCCCTCCGAGAAGTTTGTCAAG
Seq C2 exon
TACCTGCGGAACTTCATCCACGGGGGCCCGCCCGGCTACGCCCCGTACTGTGAGGAGCGCCTGAGAAGGACCTTTGTCAATGGGACACGGACACAGCCGCCCAGCTGGCTGGAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137474-'48-60,'48-58,52-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(18.9=46.5)
A:
PF0078412=MyTH4=FE(39.6=100)
C2:
PF0078412=MyTH4=FE(36.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCAAGAGGCTGCATGAC
R:
GGCTGTGTCCGTGTCCCATT
Band lengths:
226-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains