BtaEX6060072 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57376608-57377777:+
Coord C1 exon
chr15:57376608-57376811
Coord A exon
chr15:57377061-57377237
Coord C2 exon
chr15:57377688-57377777
Length
177 bp
Sequences
Splice sites
3' ss Seq
GGCATGGCTCTGCCTCCCAGGCG
3' ss Score
5.57
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GACCTGGAGCGCGGGCGGAGGGAGATGGTAGAAGAGGACCTGGATGCAGCCCTGCCCCTGCCCGACGAAGATGAGGAAGATCTCTCCGAGTATAAATTCGCCAAGTTCGCTGCCACTTACTTCCAGGGCACGACCACGCACACCTACACCCGGCGGCCACTCAAGCAGCCACTGCTGTACCACGATGATGAGGGTGATCAGCTG
Seq A exon
GCGGCCCTGGCAGTCTGGATCACCATCCTCCGGTTCATGGGGGACCTCCCAGAGCCCAGGTACCACACGGCCATGAGTGACGGCAGCGAGAAGATTCCCGTGATGACCAAGATTTACGAGACCCTGGGCAAGAAGACCTACAAGAGGGAGCTGCAGGCCCTGCAGGGCGAGGGTGAG
Seq C2 exon
GCCCAGCTCCCCGATGGGCAGAAGAAGAGCAGTGTGAGGCACAAGCTGGTGCACTTGACCTTGAAAAAGAAGTCCAAACTGACGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-'25-25,'25-24,26-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=0.305 C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAGGGAGATGGTAGAAGA
R:
TTCAAGGTCAAGTGCACCAGC
Band lengths:
255-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]