GgaEX6006876 @ galGal4
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192377199-192380377:-
Coord C1 exon
chr1:192380174-192380377
Coord A exon
chr1:192379082-192379258
Coord C2 exon
chr1:192377199-192377288
Length
177 bp
Sequences
Splice sites
3' ss Seq
GTTAAACTTTATTTCAACAGGCA
3' ss Score
6.82
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GACCTTGAGCGAGCCCAGAAGGAGCTGGAGGAAGAGGACCTTGATGCTGCATTGCCTCTCCCTGAGGAGGAGGAGGAAGATCTCTCAGAGTACAAATTTGCCAAGTTTGCTGCCACATATTTCCAGGGCACGACAACACACACCTACATTCGCCGGCCTCTCAAGCAGCCTCTCTTGTACCACGAAGATGAAGGAGACCAGTTG
Seq A exon
GCAGCACTTGCTGTGTGGATCACTATCCTCCGTTTCATGGGAGACCTCCCTGAGCCAAAATATCATACGGCCATGAGTGATGGTGGTGAGAAGATACCAGTGATGACAAAAATCTATGAAACTCTTGGGAAGAAGACTTATAAGAAAGAACTGCAGGCTCTGCAGGGAGAAGGAGAG
Seq C2 exon
AGTACTCACATTGACGGGCACAAGAAGAACAGTGTGCGGCACAAACTGGTCTCCTTAACACTCAAGAAGAAATCCAAACTGACAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'32-35,'32-33,34-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=0.288 C2=0.308
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGCTGGAGGAAGAGGAC
R:
TAAGGAGACCAGTTTGTGCCG
Band lengths:
243-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]