MmuEX6012401 @ mm10
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98076078-98077193:-
Coord C1 exon
chr7:98076990-98077193
Coord A exon
chr7:98076592-98076768
Coord C2 exon
chr7:98076078-98076167
Length
177 bp
Sequences
Splice sites
3' ss Seq
CATGTGTGCTCCATCCTCAGGCG
3' ss Score
9.13
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GACCTAGAGCGCGGACGGAGGGAGATGGTGGAAGAGGATGTTGACGCTGCCCTGCCCCTGCCTGATGAAGACGAGGAGGACCTTTCTGAGTACAAATTCGCCAAGTTTGCTGCCACCTACTTCCAGGGCACAACCACACACTCCTACACCCGGAGGCCTCTCAAGCAGCCGCTGCTCTACCACGACGATGAGGGTGACCAGCTG
Seq A exon
GCGGCGCTGGCTGTCTGGATCACCATCCTCCGGTTCATGGGGGACCTCCCAGAGCCCAAGTACCACACAGCCATGAGCGACGGCAGTGAGAAGATCCCAGTGATGACTAAGATCTACGAGACCCTAGGCAAGAAGACATATAAGAGGGAGCTGCAGGCCTTGCAGGGCGAGGGCGAG
Seq C2 exon
ACCCAGCTCCCTGAGGGGCAGAAGAAGACCAGTGTGAGACACAAGTTGGTACACTTGACACTGAAGAAAAAGTCCAAACTCACAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-'51-44,'51-43,53-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.305 C2=0.367
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGGAGATGGTGGAAGAGG
R:
AGTGTACCAACTTGTGTCTCACAC
Band lengths:
243-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types