DreEX6084390 @ danRer10
Exon Skipping
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22248545-22251444:+
Coord C1 exon
chr21:22248545-22248745
Coord A exon
chr21:22248842-22249018
Coord C2 exon
chr21:22251355-22251444
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGTATCATATGTGTTTTTAGGCT
3' ss Score
8.81
5' ss Seq
GAGGTGAAA
5' ss Score
2.91
Exon sequences
Seq C1 exon
GATCTAGAGAATGCTCCAAAACAGTTTAAGGAAGTCATTGATGAGCCTCTTCCACTTCCTGACGATGAAGAGGAGGACCTATCGGAGTATAAGTTTGCAAAGTTTGCTGCAACCTACTTCCAGGGAAATGCAACACACATGTATGTACGCCGGCCACTGAAACAGCCTCTTTTGTTTCATGAAGATGAAGGAGATCAGCTA
Seq A exon
GCTGCTCTGGCTGTGTGGATCACTGTGTTGAGGTTTATGGGAGATCTTCCAGAACCCAAATATCATATCAGTATTAGTGATGGCAGTGAGAAGATACCAGTTATGACTAAAATCTATGAGACGTTGGGAAAGAGAACCTACAAAAGGGAGCTGCAGGCCTTGCAGGTGGATGAGGAG
Seq C2 exon
AGTTCCACAACTGACATCCAGAAGAGAAACAGTGTTCGTCATAAGCTGGTGTCCCTCACATTAAAGAAGAAATCAAAGCTTACAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632-'26-25,'26-23,27-25=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.321 A=0.075 C2=0.179
Domain overlap (PFAM):
C1:
PF125723=DUF3752=PD(24.2=47.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCAAAACAGTTTAAGGAAGT
R:
AGGGACACCAGCTTATGACGA
Band lengths:
246-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]