RnoEX6003837 @ rn6
Exon Skipping
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163025406-163026575:-
Coord C1 exon
chr1:163026372-163026575
Coord A exon
chr1:163025973-163026149
Coord C2 exon
chr1:163025406-163025495
Length
177 bp
Sequences
Splice sites
3' ss Seq
CATGTGTACTCCACCCTCAGGCG
3' ss Score
7.64
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GACCTGGAGCGAGGGCGGAGGGAGATGGTGGAAGAGGATGTCGATGCTGCCCTGCCCCTGCCTGACGAGGATGAGGAGGACCTTTCTGAGTACAAATTCGCCAAATTTGCTGCCACCTACTTCCAGGGCACAACCACACACTCCTACACCCGGAGGCCCCTCAAGCAGCCACTGCTCTACCACGATGATGAGGGTGACCAGCTG
Seq A exon
GCGGCACTGGCTGTCTGGATCACCATCCTCCGGTTCATGGGGGACCTCCCAGAGCCCAAGTACCACACAGCCATGAGCGATGGCAGTGAGAAGATCCCTGTGATGACTAAGATCTATGAGACCCTGGGCAAGAAGACATACAAGAGGGAGCTGCAGGCCCTGCAGGGCGAGGGCGAG
Seq C2 exon
GCCCAGCTCTCTGAGGGGCAGAAGAAGACCAGTGTGAAACACAAGTTGGTACACTTGACACTGAAGAAGAAGTCCAAACTCACAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641-'30-29,'30-28,31-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.288 C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGGAGATGGTGGAAGAGG
R:
AGTGTCAAGTGTACCAACTTGTGT
Band lengths:
250-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]