DreEX6063707 @ danRer10
Exon Skipping
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3145531-3147727:+
Coord C1 exon
chr18:3145531-3145734
Coord A exon
chr18:3146803-3146979
Coord C2 exon
chr18:3147638-3147727
Length
177 bp
Sequences
Splice sites
3' ss Seq
TAGATCTGCTGGTTCTGCAGGCG
3' ss Score
5.1
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
Exon sequences
Seq C1 exon
GATCTGGAGCGAACACACCGGGAGCTGGAGGTGGAGGATCTAGACGAGTCTCTTCCACTCCCGGAGGACGATCTGGAGGACCTGTCCGAGTACAAATTCGCCAAGTTTTCTGCCACATATTTCCAGGGCACGAGCACACACACGTACATGAGGCGGCCATTAAAACAGCCATTACTGTTTCATGAGGATGAAGGAGATCAGCTG
Seq A exon
GCGGCTCTGGCCGTGTGGATCACCGTCCTGCGCTTCATGGGTGACCTTCCCGAACCCAAATACCACACGGCCATCAGCGACGGCAGCGAGAAGATCCCTGTCATGACCAAAATCTACGAGACACTCGGAAAGAAAACCTACAAGAGGGAACTGCAGGCACTGCAGGGAGAAGGAGAG
Seq C2 exon
AACACTAACATTGAGAGTCACAAGAAGAGCAGCGTGCGGCACAAACTGGTGTCGCTCACCCTGAAGAAGAAGTCTAAAATTACAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871-'25-25,'25-24,26-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=0.271 C2=0.267
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGTGGAGGATCTAGACG
R:
TCTTCTTCAGGGTGAGCGACA
Band lengths:
249-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]