BtaEX6060076 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57369212-57370619:+
Coord C1 exon
chr15:57369212-57369296
Coord A exon
chr15:57369845-57370063
Coord C2 exon
chr15:57370512-57370619
Length
219 bp
Sequences
Splice sites
3' ss Seq
GCTGGTGGCTGTCCTTGCAGATG
3' ss Score
8.13
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTCCAACTTCCTGAAGCTGAAGAATGCTGCCACACTGATCCAGAGGCACTGGCGGGGCCACAACTGCAGGAGGAACTACGGGCTG
Seq A exon
ATGCGGCTGGGCTTCCTGCGGCTGCAGGCCCTGCACCGCTCCCGGAAGCTGCACCAGCAGTACTGCCTGGCCCGCCGGCGCATCATCGGGTTCCAGGCCCGCTGCCGGGCCTACCTGGTACGCAAGGCCTTCCGCCACCGCCTCTGGGCCGTGATCACCGTGCAGGCCTACGCCCGGGGCATGATCGCCCGCAGGCTGCACCGGCGCCTCAGGGCCGAG
Seq C2 exon
TACCTGCGGCGCCTGGAGGCTGAGAAAATGCGGCTGGCAGAGGAGGAGAAGCTCCGGAAGGAGATGAGTGCCAAGAAGGCCAAGGAGGAGGCCGAACGCAAACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-'21-21,'21-20,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.583
Domain overlap (PFAM):
C1:
PF0061222=IQ=WD(100=72.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAACTTCCTGAAGCTGAAGA
R:
CTGATGTTTGCGTTCGGCCTC
Band lengths:
193-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]