MmuEX6012397 @ mm9
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:105227306-105228499:-
Coord C1 exon
chr7:105228415-105228499
Coord A exon
chr7:105227722-105227940
Coord C2 exon
chr7:105227306-105227413
Length
219 bp
Sequences
Splice sites
3' ss Seq
ACAGCTTACTGTCCTTGCAGATT
3' ss Score
9.64
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTCCAACTTCCTGAGACTGAAGAGTGCTGCCACACTGATCCAGAGGCACTGGCGGGGCCACCACTGTAGGAAAAACTATGAGCTG
Seq A exon
ATTCGTCTTGGCTTCCTGCGGCTGCAGGCCCTGCACCGCTCCCGGAAGCTGCACAAGCAGTACCGCCTGGCCAGACAGCGCATAATAGAGTTCCAGGCCCGCTGCCGGGCCTATCTGGTGCGCAAGGCCTTCCGCCACCGCCTCTGGGCCGTGATCACCGTGCAGGCCTATGCCCGAGGCATGATTGCCCGCCGGCTACACCGCCGCCTCCGGGTTGAG
Seq C2 exon
TACCAGCGGCGCCTCGAGGCAGAGAGGATGCGTCTGGCAGAGGAGGAGAAACTCCGAAAGGAGATGAGTGCCAAGAAGGCCAAAGAGGAGGCTGAGCGCAAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-'31-29,'31-28,32-29=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.583
Domain overlap (PFAM):
C1:
PF0061222=IQ=WD(100=72.4)
A:
PF0061222=IQ=WD(100=28.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCCTGAGACTGAAGAGTGC
R:
GCGCTCAGCCTCCTCTTTG
Band lengths:
180-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: