RnoEX6003833 @ rn6
Exon Skipping
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163028223-163029487:-
Coord C1 exon
chr1:163029403-163029487
Coord A exon
chr1:163028674-163028892
Coord C2 exon
chr1:163028223-163028330
Length
219 bp
Sequences
Splice sites
3' ss Seq
TGGCTTGCTGACCCTTGCAGATT
3' ss Score
7.92
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTCCAACTTCCTGAGATTGAAGAGTGCAGCCACACTGATCCAGAGGCATTGGCGGGGCCACCACTGTAGGAAAAACTATGAGCTG
Seq A exon
ATTCGTCTTGGCTTCCTGCGGTTGCAGGCCCTGCACCGCTCCCGGAAACTGCACAAACAGTACCGCCTGGCCAGACAGCGCATAATAAAGTTCCAGGCCCGCTGCCGGGCCTACCTGGTGCGCAGGGCCTTCCGCCACCGCCTCTGGGCCGTGATCACCGTGCAGGCCTATGCCCGGGGCATGATTGCGCGCCGGCTACACCGGCGCCTCCGAGTTGAG
Seq C2 exon
TACTGGCGGCGCCTTGAGGCAGAGAGGATGCGGCTGGCAGAGGAGGAGAAGCTAAGAAAGGAGATGAGTGCCAAGAAGGCCAAGGAGGAGGCGGAGCGCAAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641-'25-24,'25-23,26-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.546
Domain overlap (PFAM):
C1:
PF0061222=IQ=WD(100=72.4)
A:
PF0061222=IQ=WD(100=28.8),PF0061222=IQ=WD(100=28.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAACTTCCTGAGATTGAAGAGT
R:
CTCCGCCTCCTCCTTGGC
Band lengths:
181-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]