DreEX6063710 @ danRer10
Exon Skipping
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3143498-3145426:+
Coord C1 exon
chr18:3143498-3143582
Coord A exon
chr18:3143661-3143879
Coord C2 exon
chr18:3145109-3145426
Length
219 bp
Sequences
Splice sites
3' ss Seq
TGCTCGTTTCTTCCTTGTAGATG
3' ss Score
10.56
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
ATCCAACTTCCTGAAGATGAAGAAATCAGCTATGCTAATCCAGAAGACATGGCGAGGTTATTACTGCCGGAAGAACTACGGAGCG
Seq A exon
ATGCGTGGCGGTTTCTCACGTCTGCAGGCGCTATATAGATCTCGCAAACTCTACCAGACGTATCATGTGGCACGGCAGAGAATCATGCTCTTCCAGGGCCGATGCAGAGGTTTTCTGGTGCGCAGAGCGTTTCGCCACCGCCTGTGGGCTGTGATCACAATCCAGGCATATACGAGAGGAATGATCGCCCGCCGGCTCTACAAACGACTCAAAGGAGAG
Seq C2 exon
TACCGGCGACGTTTGGAGGCCGAAAAGTTGCGTCTGGCCGAAGAGCAGAAGCTCAGGAATCAAATGAGCGCCAGAAAAGCCAAAGAAGAAGCTGAAAAGATGCATCAGGAGAGATTGGCACAGCTGGCGCGAGAAGACGCCGAACGGGAGAAGAAGGAGCGGCAGGAGGCTCGCAGGAAAATGGAGATGTTGGACCAGATGGAGAAAGCCAGACAGGAGCCAGTCAACGATTCTGATATGGTGGACAAGATGTTCGGCTTCCTGGGAACCACAAACTCTTTCCCTGGTCAGGAAGGTCAAGCGCCTGCTGGGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871-'22-21,'22-20,23-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.717
Domain overlap (PFAM):
C1:
PF0061222=IQ=WD(100=72.4)
A:
PF0061222=IQ=WD(100=28.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGAAGACATGGCGAGGT
R:
GCCGAACATCTTGTCCACCAT
Band lengths:
306-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]