GgaEX6006872 @ galGal3
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198130138-198131646:-
Coord C1 exon
chr1:198131562-198131646
Coord A exon
chr1:198130378-198130596
Coord C2 exon
chr1:198130138-198130245
Length
219 bp
Sequences
Splice sites
3' ss Seq
CATCGTGCTCCCTTTTGCAGATG
3' ss Score
12.52
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
GTCCAATTTCCTGAAAGTGAGAAATTCAGTCCTGATGATTCAGAGATACTGGCGTGGACATAACTGCAGGAAGAACTACGGTGCT
Seq A exon
ATGCGTATTGGCTTCCTGAGACTGCAGGCCCTCTACCGATCCCGCAAACTCCACAAGCAGTACCACATGGCCCGCCGGCGCATCATCGAGTTCCAGGCCCGCTGCCGGGGCTACCTGGTCCGTAGGGCTTTCCGTCATCGCCTCTGGGCTGTCCTCACCGTGCAGGCCTACGCACGGGGCATGATAGCACGGAGGCTGTACAAGCGCCTCCGAGGAGAG
Seq C2 exon
TATCATCGGCGCCTGGAAGCAGAGAAACTTCGGCTGGCAGAAGAGGAACGGCTCCGAAAGGAGATGAGTGCCAAGAAAGCCAAAGAGGAAGCAGAAAAGAAACACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.444
Domain overlap (PFAM):
C1:
PF0061222=IQ=WD(100=72.4)
A:
PF0061222=IQ=WD(100=28.8),PF0061222=IQ=WD(100=28.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAATTTCCTGAAAGTGAGAAA
R:
TGGTGTTTCTTTTCTGCTTCCTCT
Band lengths:
192-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]