DreEX6084393 @ danRer10
Exon Skipping
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22245861-22248460:+
Coord C1 exon
chr21:22245861-22245945
Coord A exon
chr21:22246030-22246248
Coord C2 exon
chr21:22248143-22248460
Length
219 bp
Sequences
Splice sites
3' ss Seq
ATTATGTCTGTTTTTTCCAGATG
3' ss Score
10.28
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
AACTAAATTCCTGAAGGTTAGAAGAGCTGTGATGTTAATCCAGCGCATATGGAGAGGCTACATCACTAGAAAGCACTACGCTGTG
Seq A exon
ATGCGTGTAGGTTTCTTGCGACTTCAGGCCTTGTACAGGTCACGGAAACTGCATCAGGAGTATCAGGCGACCAGGATACGTGTCACATTGCTGCAGGCCTGGTGTCGAGGACTCCTGGTACGGCGTACTTTTTCCAAACGCTTCCATGCGGTTCTGACAATCCAGGCTTATGCTCGAGGAATGATAGCACGGAGACAGTGCAAGAGACTCAGACTGGAG
Seq C2 exon
CGGGATCGTCGGTTAGAAGCGGAGCGGCAGCGTCTGGCTGAAGAGGAGCGTCTGAAAAACCAGATGACGGCGCGCAGGGCTCGGGCTGAGGCAGCCAGGAAGCATCAGGAGCGCCTGGCGCAGCTCGACCGAGAGCAGGAGGAGAGAGAGCTGGCAGAGCGCAACGAGACACGGAGGAAAAAAGAGCTTCTAGAGCAGATGGAGAGAGAAAAAAAGGAGCCAGTAAATGACTCCGACATGGTGGACAAGATGTTCGGATTCCTGGGCAATGCCAATTCCCTTCCCAACCTGGAGGGTGAAGCACCAGAAGGGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632-'23-21,'23-20,24-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.787
Domain overlap (PFAM):
C1:
PF0061222=IQ=WD(100=72.4)
A:
PF0061222=IQ=WD(100=28.8),PF0061222=IQ=WD(100=27.4)
C2:
PF125723=DUF3752=PU(74.2=92.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGCATATGGAGAGGCTACA
R:
TCTTGTCCACCATGTCGGAGT
Band lengths:
294-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]