BtaEX6060086 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57350453-57352086:+
Coord C1 exon
chr15:57350453-57350529
Coord A exon
chr15:57351083-57351202
Coord C2 exon
chr15:57351944-57352086
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCTGGATGTTGCCCTACCAGGTG
3' ss Score
7.42
5' ss Seq
AAGGTGGAG
5' ss Score
1.51
Exon sequences
Seq C1 exon
ACCGCACGTTTGAAAACCTGGATGCCTGCGAGGTCCTCTTCTCGCCATCCCTGGCCACAGCCGCGTCCTTGCTGGAG
Seq A exon
GTGAACCCCCGAGACCTGATGAACTGCCTGACCAGCCGCACCCTCATCACTCGAGGGGAGACAGTGTCCACTCCGCTCAGCAGGGAGCAGGCGCTGGACGTGCGAGATGCCTTTGTCAAG
Seq C2 exon
GGCATCTATGGGCGGCTCTTCGTGTGGATCGTGGACAAGATCAATGCAGCCATTTATAAGCCCCCTTCCCAGGAAGTGAAGAACTCTCGCCGGTCCATTGGTCTCCTGGACATTTTTGGGTTCGAGAACTTTGCAGTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.8=100)
A:
PF0006316=Myosin_head=FE(5.9=100)
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCACGTTTGAAAACCTGG
R:
GTTCACTGCAAAGTTCTCGAACC
Band lengths:
218-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]