MmuEX6012389 @ mm10
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98093478-98094743:-
Coord C1 exon
chr7:98094667-98094743
Coord A exon
chr7:98094276-98094395
Coord C2 exon
chr7:98093478-98093620
Length
120 bp
Sequences
Splice sites
3' ss Seq
CATCTGGGTGTTTGCTCTAGGTG
3' ss Score
9.9
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
CCCGGACATTTGAGAACTTGGATGCGTGTGAAGTCCTCTTCTCCCCATCGCTGGCCACGGCAGCTTCTCTGCTCGAG
Seq A exon
GTGAACCCCCCAGACCTGATGAGCTGCCTCACCAGCCGCACCCTCATCACCCGTGGGGAGACGGTGTCCACCCCTCTCAGCAGGGAACAGGCGCTGGATGTGCGAGATGCCTTTGTCAAG
Seq C2 exon
GGCATCTATGGGCGGCTCTTTGTGTGGATTGTGGAGAAGATCAACGCAGCAATCTACAAGCCACCCCCCCTGGAAGTGAAGAACTCTCGCCGGTCCATCGGTCTCCTGGACATCTTTGGATTTGAGAACTTCACTGTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-'30-25,'30-24,31-25=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.8=100)
A:
PF0006316=Myosin_head=FE(5.9=100)
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGACATTTGAGAACTTGGA
R:
TGTTCACAGTGAAGTTCTCAAATCCA
Band lengths:
219-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types