DreEX6084400 @ danRer10
Exon Skipping
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22227198-22238954:+
Coord C1 exon
chr21:22227198-22227274
Coord A exon
chr21:22238603-22238722
Coord C2 exon
chr21:22238812-22238954
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTGATGGTCTTATTTTACAGGTG
3' ss Score
10.97
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
CTCGAACACAGAGAAACCTGGACACCTGCGTGGTGGTTCGCTCTCCCGACCTGGCTAACGCAGCCTCTCTGTTGGAG
Seq A exon
GTGGACCCTCAGGATGTCATGATGTGTCTGACCACACGTACCCTGATCACCAGAGGTGAGAGTGTTTCCACCCCCCTCAGTGTGGAGCAGGGACTGGACGTCCGGGATGCCTTTGTCAAG
Seq C2 exon
GGAATCTATGGGAGGTTGTTTGTGTGGATAGTGGATAAAATCAATGCTACCATCTTCAGGGCTCCTTCCACAGAAAACAGGACCGTTCGCAGGTCTATAGGCCTGCTCGACATCTTCGGTTTCGAGAATTTCACTGTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632-'8-9,'8-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.8=100)
A:
PF0006316=Myosin_head=FE(6.1=100)
C2:
PF0006316=Myosin_head=FE(7.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAACACAGAGAAACCTGGAC
R:
TGTTAACAGTGAAATTCTCGAAACCG
Band lengths:
218-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]