RnoEX6003823 @ rn6
Exon Skipping
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163045046-163046268:-
Coord C1 exon
chr1:163046192-163046268
Coord A exon
chr1:163045818-163045937
Coord C2 exon
chr1:163045046-163045188
Length
120 bp
Sequences
Splice sites
3' ss Seq
AACCTGGGCATGTGCTCTAGGTG
3' ss Score
6.23
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CCCGTACGTTTGAGAACTTGGATGCGTGCGAAGTCCTCTTCTCCCCATCGCTGGCCACGGCAGCTTCTCATCTCGAG
Seq A exon
GTGAATCCCCCAGACCTGATGAGCTGCCTCACCAGCCGCACCCTCATCACCCGTGGGGAAACGGTCTCCACCCCTCTCAGCAGGGAGCAGGCGCTGGATGTGCGAGATGCCTTTGTCAAG
Seq C2 exon
GGCATCTATGGGCGGCTCTTTGTATGGATTGTGGAGAAGATCAATGCAGCAATCTACAAACCACCCTCTCAGGAAGTGACGAACTCTCGCCGGTCCATCGGTCTCCTGGACATCTTTGGGTTTGAGAACTTCACCGTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641-'13-11,'13-10,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.8=100)
A:
PF0006316=Myosin_head=FE(5.9=100)
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTACGTTTGAGAACTTGGA
R:
GTTCACGGTGAAGTTCTCAAACC
Band lengths:
218-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]