DreEX6063717 @ danRer10
Exon Skipping
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3123169-3125448:+
Coord C1 exon
chr18:3123169-3123245
Coord A exon
chr18:3125102-3125221
Coord C2 exon
chr18:3125306-3125448
Length
120 bp
Sequences
Splice sites
3' ss Seq
ATGATGCTGTGTTTTAACAGGTG
3' ss Score
10.51
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CCCGCACATATGATAACCTGGACGCCTGTGAGGTGGTGCGCTGCTCAGCTCTCACCACCGCTGCTGTTTTACTAGAG
Seq A exon
GTGGACTTGAAGGATCTGATGAACTGTTTGACCAGCCGAACTATAATAACCCGTGGAGAGACGGTGTCTACTCCGCTCAGCATTGAACAGGCATTGGACGTGAGAGACGCTTTTGTTAAG
Seq C2 exon
GGCATTTATGGCCGTTTGTTTGTGTGGATTGTTGAGAAAATCAACGCAGCCATTTATAAACCTCCATCTCTGGAGCTGAAAGCAGTGCGAAGATCCATCGGCCTATTAGATATCTTCGGCTTCGAGAACTTCATGGTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.8=100)
A:
PF0006316=Myosin_head=FE(5.9=100)
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCACATATGATAACCTGGA
R:
GTTAACCATGAAGTTCTCGAAGCC
Band lengths:
218-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]