GgaEX6006865 @ galGal4
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192398244-192400163:-
Coord C1 exon
chr1:192400087-192400163
Coord A exon
chr1:192399126-192399245
Coord C2 exon
chr1:192398244-192398386
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTGGTGGTACCTTTGCCAGGTT
3' ss Score
5.3
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
CTCGGACCTATGACAACCTGGATGCTTGCGAGGTTGTGCAGTCAGCGTCACTGATCACTGCAGCATCATTGCTGGAG
Seq A exon
GTTGACTCTCAGGATGTGATGAACTGCCTCACCAGCCGAACGATAATCACCAGAGGTGAGACCGTCTCAACCCCTCTCAGCATGGAACAAGCACTGGATGTGAGGGATGCTTTTGTAAAG
Seq C2 exon
GGAATTTATGGGCGGCTCTTTGTTTGGATCGTGGAGAAGATCAATGCTGCAATTTACAGGCCTCCTTCACAGGAACTCAAAAGTGTTAGAAGATCCATTGGCCTCCTTGACATCTTTGGCTTTGAGAACTTCACTGTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'12-15,'12-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.8=100)
A:
PF0006316=Myosin_head=FE(5.9=100)
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGACCTATGACAACCTGG
R:
GTTCACAGTGAAGTTCTCAAAGCC
Band lengths:
218-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]