BtaEX6060540 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77242131-77242644:+
Coord C1 exon
chr15:77242131-77242191
Coord A exon
chr15:77242284-77242397
Coord C2 exon
chr15:77242504-77242644
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCTCTGCCCTGCTCCTCCAGGTC
3' ss Score
11.01
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
GCTGGAGATGTATCGCCGAGTGCACAACCTGCGGATCCTGGCCTGCGGGGGTGACGGCACG
Seq A exon
GTCGGCTGGATCCTCTCCACGCTGGACCAGCTGCGCTTGAAGCCGCCGCCGCCAGTCGCCATCCTGCCCCTGGGCACTGGCAATGACTTGGCCCGCACCCTCAACTGGGGCGGG
Seq C2 exon
GGCTACACTGACGAGCCTGTGTCCAAGATCCTGTCCCACGTGGAGGAGGGCAACGTGGTACAGCTGGACCGCTGGGACCTCCATGCGGAGCCCAACCCCGAGGCGGGGCCCGAGGAGCGAGATGAGGGGGCCACCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636-'25-24,'25-23,26-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.468
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(16.0=100)
A:
PF0078119=DAGK_cat=FE(29.6=100)
C2:
PF0078119=DAGK_cat=PD(19.2=51.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGTATCGCCGAGTGCAC
R:
GTCGGTGGCCCCCTCATC
Band lengths:
195-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]