GgaEX6037737 @ galGal4
Exon Skipping
Gene
ENSGALG00000008380 | DGKZ
Description
diacylglycerol kinase zeta [Source:RefSeq peptide;Acc:NP_001026363]
Coordinates
chr5:22963949-22964898:-
Coord C1 exon
chr5:22964838-22964898
Coord A exon
chr5:22964328-22964441
Coord C2 exon
chr5:22963949-22964089
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTCTGCACCCTCTTTCACAGGTG
3' ss Score
9.72
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCTGGAGTTGTACCGCAAGGTCCACAACCTACGGATCCTGGCATGTGGGGGAGATGGCACG
Seq A exon
GTGGGCTGGATCCTCTCCATTCTAGACCAGCTGCGCCTCAACCCACCTCCTCCTGTGGCCATCCTGCCATTGGGGACAGGCAATGACTTGGCCAGGACCCTGAACTGGGGCGGG
Seq C2 exon
GGTTACACAGATGAGCCTCTGTCCAAGATCTTGTCACATGTGGAAGATGGGAACATTGTGCAGCTTGATCGCTGGAACCTCCGTGTGGAAGCAAACCCTGAAGCAAACCCTGAGGAAAAGGATGAGGCAGCTGCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-'24-22,'24-21,25-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.298
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(16.0=100)
A:
PF0078119=DAGK_cat=FE(29.6=100)
C2:
PF0078119=DAGK_cat=PD(19.2=51.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGTTGTACCGCAAG
R:
CTTGTCAGCAGCTGCCTCATC
Band lengths:
202-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]