MmuEX6103057 @ mm10
Exon Skipping
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91939324-91939813:-
Coord C1 exon
chr2:91939753-91939813
Coord A exon
chr2:91939551-91939664
Coord C2 exon
chr2:91939324-91939464
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTGCTCTGCCCTCCTCCAGGTT
3' ss Score
11.48
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCTGGAAATGTACCGCAAAGTACATAATTTGAGGATTCTGGCTTGCGGGGGTGATGGCACG
Seq A exon
GTTGGCTGGATTCTCTCCACCCTGGACCAGCTGCGCTTAAAACCACCGCCTCCTGTAGCCATCCTGCCTCTGGGCACTGGCAATGACCTGGCCCGAACCCTCAACTGGGGTGGG
Seq C2 exon
GGTTACACAGATGAGCCTGTGTCAAAGATCCTTTCCCATGTTGAGGAGGGGAATGTGGTACAGCTGGACCGTTGGGACCTCCGAGCAGAGCCCAACCCTGAGGCGGGGCCTGAGGAGCGAGATGATGGAGCCACTGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-'28-52,'28-49,29-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.447
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(16.0=100)
A:
PF0078119=DAGK_cat=FE(29.6=100)
C2:
PF0078119=DAGK_cat=PD(19.2=51.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAAATGTACCGCAAAGT
R:
CCGGTCAGTGGCTCCATCATC
Band lengths:
202-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types